Repbase Reports

2010, Volume 10, Issue 8
August 31, 2010
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1098

Gypsy-18A_SB-I

LTR retrotransposon from sorghum: internal portion.

Submitted:
15-Jul-2010
Accepted:
31-Aug-2010
Key Words:
Gypsy; LTR Retrotransposon; Transposable Element; PMD; Gypsy-18A_SB-I
Source:
Sorghum bicolor
Organism:
Sorghum bicolor
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Sorghum
[1] Authors:
Bao,W. and Jurka,J.
Title:
LTR retrotransposons from sorghum.
Journal:
Repbase Reports 10(8), 1098-1098 (2010)
Abstract:
Compare to Gypsy-18_SB-I, Gypsy-18A_SB-I contains extra ~5100-bp portion near to the 3'-end, encoding two extra proteins on the complementary strand, whose relatives are also found in other Gypsy LTR retrotransposons found in other plants. Gypsy-18A_SB-I_3p contains plant mobile domain (PMD) domain, which is also found associated with some MuDR transposases.
Derived:
Positions 348054 365080 Accession No ABXC01001026.1 EMBL/GenBank/DDBJ
Download Sequence - Format:
IG, EMBL, FASTA
References:

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