Repbase Reports |
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| 2010, Volume 10, Issue 5 |
| May 31, 2010 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 776 |
IMPB_01 |
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Consensus of repeated region of mouse chromosome 6 containing 60 tandem copies of a complex pattern. |
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Submitted: 21-May-2010 |
Accepted: 31-May-2010 |
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Key Words: Satellite; Simple Repeat; pattern of tandem duplications; (CT)n; (CA)n; low complexity insertions; conservative cores; IMPB_01 |
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Source: Mus musculus |
Organism: Mus musculus |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus |
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Authors: Tetuev,R.K. and Nazipova,N.N. |
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Title: Consensus of repeated region of mouse chromosome 6 containing 60 tandem copies of a complex pattern. |
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Journal: Repbase Reports 10(5), 776-776 (2010) |
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Abstract: The region of mouse chromosome 6 (build 37.1, reference assembly C57BL/6J, NC_000072) located at 114,441,515-114,587,670 contains 60 tandem copies of a pattern with average lenght 2400 bps. The pattern consists of three conservative (98% similarity) parts separated by low complexity insertions of variable length. The general scheme of periodicity is as follows: (CA)n core1 (CT)m core2 (CT)k core3, where 12 <= n <= 40, 30 <= m <= 166, k = 12, and conservative parts core1, core2 and core3 are of the maximum lengths respectively 88, 663 and 1566.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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