Repbase Reports

2010, Volume 10, Issue 4
April 30, 2010
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 548

Copia-2-I_FCy

Internal portion of a Copia-2_FCy LTR retrotransposon - consensus.

Submitted:
22-Jan-2010
Accepted:
22-JAN-2010
Key Words:
Copia; LTR Retrotransposon; Transposable Element; Copia-2_FCy; Copia-2-LTR_FCy; Copia-2-I_FCy
Source:
Fragilariopsis cylindrus
Organism:
Fragilariopsis cylindrus
Taxonomy:
Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Fragilariopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Copia-2_FCy family of LTR retrotransposons from diatom.
Journal:
Repbase Reports 10(4), 548-548 (2010)
Abstract:
The genome contains several proviral copies of Copia-2_FCy that are >98% identical to the consensus sequence. Copia-2_FCy is characterized by 6-bp TSDs. A 5'-terminus of its internal portion is not complementary to known tRNAs, and it does not form a self-priming palindrome. This family belongs to an ancient group of copia LTR retrotransposons, which includes also Copia6_TP, Copia7_TP and Copia8_TP. The consensus sequence was derived from sequence data produced by the US Department of Energy Joint Genome Institute http://www.jgi.doe.gov/ in collaboration with the user community.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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