Repbase Reports

2010, Volume 10, Issue 3
March 31, 2010
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 243

Nimb-1_DPu

A family of Nimb non-LTR retrotransposons from Daphnia - consensus sequence.

Submitted:
26-Feb-2010
Accepted:
31-Mar-2010
Key Words:
Nimb; Non-LTR Retrotransposon; Transposable Element; I group; Nimb-1_DPu
Source:
Daphnia pulex
Organism:
Daphnia pulex
Taxonomy:
Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
A recently active family of target-site specific Nimb non-LTR retrotransposons from daphnia.
Journal:
Repbase Reports 10(3), 243-243 (2010)
Abstract:
The consensus sequence was derived from multiple alignment of several copies less than 2% diverged from each other. The 3' terminus is composed of the (AACC)n microsatellite. Usually, Nimb-1_DPu elements are inserted at the same target site in the same unclassified repetetive element and are flanked by 10-16-bp target site duplications (TSD): 5'-AAAAAATCGTATAAAAGGAGAGAGAAAAGGC[TSD]Nimb-1_DPu[TSD]-3.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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