Repbase Reports

2010, Volume 10, Issue 12
December 31, 2010
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 2176

TreLTRRT2

LTR retrotransposon of unknown class from CLUSTALW alignment of two, full-length elements from T. repens L Genbank Accessions GU443965 positions 104389-112569 and GU443966 positions 61716-69898.

Submitted:
03-Dec-2010
Accepted:
31-Dec-2010
Key Words:
LTR Retrotransposon; Transposable Element; TreLTRRT2
Source:
Trifolium repens
Organism:
Trifolium repens
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
[2] Authors:
Laten,H.M., Hand,M.L., Cogan,N.O.I. and Forster,J.W.
Title:
LTR retrotransposons in white clover, Trifolium repens L.
Journal:
Repbase Reports 10(12), 2176-2176 (2010)
Abstract:
Composite of internal region of two independent LTR retrotransposon insertions that are 97.1% identical at the DNA level, including LTRs and 98.4% identical excluding LTRs. LTRs from each element are 99.9% and 100% identical, respectively. Related to Ram4 from M. truncatula. Gag-prot ORF separated from RT-RH ORF by +1 frameshift. 143 bp region where ORF1 and ORF2 overlap does not encode identifiable protein domains. No detectable integrase. LTRs flanked by 5 bp target site duplications.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Hand,M.L., Cogan,N.O.I., Sawbridge,T.I., Spangenberg,G.C. and Forster,J.W.
    Comparision of homoeolocus organisation in paired BAC clones from white clover (Trifolium repens L.) and microcolinearity with model legume species.
    BMC Plant Biology 10, 94-94 (2010)

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