Repbase Reports

2010, Volume 10, Issue 1
January 31, 2010
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 108

Ambal-3_FCy

Ambal-3_FCy is a family of Ambal non-LTR retrotransposon - consensus.

Submitted:
26-Jan-2010
Accepted:
31-Jan-2010
Key Words:
Ambal; Non-LTR Retrotransposon; Transposable Element; Ambal-3_FCy
Source:
Fragilariopsis cylindrus
Organism:
Fragilariopsis cylindrus
Taxonomy:
Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Fragilariopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Ambal, a novel clade of non-LTR retrotransposons from diatoms.
Journal:
Repbase Reports 10(1), 108-108 (2010)
Abstract:
The Ambal-3_FCy consensus sequence was derived from 4 copies >99% identical to each other. Ambal-3_FCy is characterized by long 20-bp TSDs (also confirmed by one Ambal-3_FCy element inserted into a Copia-2-LTR_FCy sequence). We expect that this family is currently transposable. The consensus sequence was derived from sequence data produced by the US Department of Energy Joint Genome Institute http://www.jgi.doe.gov/ in collaboration with the user community.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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