Repbase Reports
2009, Volume 9, Issue 7
July 31, 2009
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1726

RTEX-10_BF

Amphioxus RTEX-10_BF autonomous non-LTR retrotransposon - consensus.

Submitted:
30-Jun-2009 		Accepted:
31-Jul-2009
Key Words:
RTEX; Non-LTR Retrotransposon; Transposable Element; Jockey-7_BF; RTEX-10_BF
Source:
Branchiostoma floridae 		Organism:
Branchiostoma floridae 		Taxonomy:
Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma
[2] Authors:
Kapitonov,V. and Jurka,J.
Title:
Young families of RTEX non-LTR retrotransposons from the amphioxus genome.
Journal:
Repbase Reports 9(7), 1726-1726 (2009)
Abstract:
The complete RTEX-10_BF consensus sequence contains two ORFs. The RTEX-10_BF ORF1 protein contains the DnaJ (1-70 aa) and esterase domains (487-672 aa). The 3' terminus is composed of the (CATT)n microsatellite. The DnaJ domain is conserved in the ORF1 proteins encoded by several families of RTEX retrotransposons in the B. floridae genome. Therefore, DnaJ is necessary for proliferation of the RTEX retrotransposons.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Putnam,N.H., Butts,T., Ferrier,D.E., Furlong,R.F., Hellsten,U., Kawashima,T., Robinson-Rechavi,M., Shoguchi,E., Terry,A., Yu,J.K., Benito-Gutierez,E.L., Dubchak,I., Garcia-Fernadez,J., Gibson-Brown,J.J., Grigoriev,I.V., Horton,A.C., De Jong,P.J., Jurka,J., Kapitonov,V.V., Kohara,Y., Kuroki,Y., Lindquist,E., Lucas,S., Osoegawa,K., Pennacchio,L.A., Salamov,A.A., Satou,Y., Sauka-Spengler,T., Schmutz,J., Shin-I,T., Toyoda,A., Bronner-Fraser,M., Fujiyama,A., Holland,L.Z., Holland,P.W., Satoh,N. and Rokhsar,D.S.
    The amphioxus genome and the evolution of the chordate karyotype.
    Nature 453(7198), 1064-1071 (2008)

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