Repbase Reports |
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| 2009, Volume 9, Issue 7 |
| July 31, 2009 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1528 |
R5-1_SM |
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A family of planarian NeSL non-LTR retrotransposons - consensus. |
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Submitted: 31-Jul-2009 |
Accepted: 31-Jul-2009 |
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Key Words: NeSL; Non-LTR Retrotransposon; Transposable Element; R5-1_SM |
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Source: Schmidtea mediterranea |
Organism: Schmidtea mediterranea |
Taxonomy: Eukaryota; Metazoa; Platyhelminthes; Turbellaria; Seriata; Tricladida; Paludicola; Dugesiidae; Schmidtea |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: NeSL/R5 retrotransposons from Schmidtea Mediterranea. |
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Journal: Repbase Reports 9(7), 1528-1528 (2009) |
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Abstract: R5-1_SM belongs to the R5 group of the NeSL clade of non-LTR retrotransposons. The R5-1_SM consensus sequence was derived from copies that are ~95% identical to the consensus sequence. Analogously to the nematode NeSL-1, the R5-1_SM protein containing the reverse transcriptase domain is fused with the Ulp1 cysteine protease domain (aa pos. 17-162 in R5-1_SM_2p). Based on PSI-BLAST, the Ulp1 cysteine protease domain is fused with with the RT domain in other families of Schmidtea mediterranea NeSL/R5, including R5-2_SM, and LIN2_SM-LIN11_SM.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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