Repbase Reports

2009, Volume 9, Issue 3
March 31, 2009
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 712

VIHAT2-N1_VV

VIHAT2-N1_VV, non-autonomous DNA transposon - a consensus sequence.

Submitted:
05-Feb-2009
Accepted:
31-Mar-2009
Key Words:
hAT; DNA transposon; Transposable Element; Nonautonomous; TIR; MITE; mHatvine-2.1; VIHAT2-N1_VV
Source:
Vitis vinifera
Organism:
Vitis vinifera
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis
[1] Authors:
Benjak,A., Boue,S., Forneck,A. and Casacuberta,J.M.
Title:
Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.). submitted.
Journal:
Repbase Reports 9(3), 712-712 (2009)
Abstract:
VIHAT2-N1_VV (mHatvine-2.1 in [1]) is a non-autonomous DNA transposon which is a deletion derivate of the autonomous VIHAT2. Individual copies are >90% identical to the consensus sequence. TIRs are 23 bp-long and flanked by 8 bp-long TSDs. There are approximately 22 highly conserved copies present in the genome which could place this family in the group of MITEs.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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