Repbase Reports

2009, Volume 9, Issue 3
March 31, 2009
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 711

TE-7-1_VV

TE-7-1_VV, unclassified transposable element - a consensus sequence.

Submitted:
05-Feb-2009
Accepted:
31-Mar-2009
Key Words:
Transposable Element; Nonautonomous; Mila; TE-7-1_VV
Source:
Vitis vinifera
Organism:
Vitis vinifera
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis
[1] Authors:
Benjak,A., Boue,S., Forneck,A. and Casacuberta,J.M.
Title:
Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.). submitted.
Journal:
Repbase Reports 9(3), 711-711 (2009)
Abstract:
TE-7-1_VV (named Mila in [1]) is an unclassified transposable element that does not seem to be related to any known type of TEs. Individual copies are >90% identical to the consensus sequence. There are approximately 180 conserved copies in the genome. It contains neither TIRs nor LTRs and is flanked by 7 bp-long TSDs. It does not have any ORFs nor have any putative similarities to known proteins, but it is highly transcribed as there are around 100 ESTs (NCBI database for Vitis) that match to this element.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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