Repbase Reports

2009, Volume 9, Issue 3
March 31, 2009
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 709

Harbinger-3N3B_VV

Harbinger-3N3B_VV, non-autonomous DNA transposon - a consensus sequence.

Submitted:
05-Feb-2009
Accepted:
31-Mar-2009
Key Words:
Harbinger; DNA transposon; Transposable Element; Nonautonomous; PIF; TIR; MITE; mPifvine-3.4; Harbinger-3N3B_VV
Source:
Vitis vinifera
Organism:
Vitis vinifera
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis
[1] Authors:
Benjak,A., Boue,S., Forneck,A. and Casacuberta,J.M.
Title:
Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.). submitted.
Journal:
Repbase Reports 9(3), 709-709 (2009)
Abstract:
Harbinger-3N3B_VV (mPifvine-3.4 in [1]) is a non-autonomous DNA transposon of the MITE type. Unlike the Harbinger-3N1_VV, this element is not a deletion derivate of the autonomous Harbinger-3_VV but it has the same TIRs as Harbinger-3_VV. The first 100 bases are shared with Harbinger-3N3_VV. Individual copies are >80% identical to the consensus sequence. There is a number of copies that are less conserved. TIRs are 18 bp-long (with 1 conserved mismatch) and flanked by 3 bp-long TSDs. There are approximately 20 conserved copies in the genome.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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