Repbase Reports

2009, Volume 9, Issue 3
March 31, 2009
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 705

EnSpm-4N1_VV

EnSpm-4N1_VV, non-autonomous DNA transposon - a consensus sequence.

Submitted:
05-Feb-2009
Accepted:
31-Mar-2009
Key Words:
EnSpm; DNA transposon; Transposable Element; CACTA; TIR; MITE; mCactavine-4.1; EnSpm-4N1_VV
Source:
Vitis vinifera
Organism:
Vitis vinifera
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis
[1] Authors:
Benjak,A., Boue,S., Forneck,A. and Casacuberta,J.M.
Title:
Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.). submitted.
Journal:
Repbase Reports 9(3), 705-705 (2009)
Abstract:
EnSpm-4N1_VV (mCactavine-4.1 in [1]) is a non-autonomous DNA transposon which is a deletion derivate of the autonomous EnSpm-4VV. Individual copies are >90% identical to the consensus sequence. TIRs are 6 bp-long and flanked by 3 bp-long TSDs. There are approximately 30 highly conserved copies present in the genome which could place this family in the group of MITEs. On the other hand, the size of this element is larger from that of "standard" MITEs. We suggest this family be an intermediate between deletion derivatives of autonomous elements and MITEs.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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