Repbase Reports |
|---|
| 2009, Volume 9, Issue 10 |
| October 31, 2009 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 2161 |
P-1N1_TV |
|||
|---|---|---|---|
Nonautonomous P DNA transposon from Trichomonas vaginalis - a consensus. |
|||
|
Submitted: 26-Oct-2009 |
Accepted: 31-Oct-2009 |
||
|
Key Words: P; DNA transposon; Transposable Element; Nonautonomous; P-1_TV; P-1N1_TV |
|||
|
Source: Trichomonas vaginalis |
Organism: Trichomonas vaginalis |
Taxonomy: Eukaryota; Parabasalidea; Trichomonada; Trichomonadida; Trichomonadidae; Trichomonadinae; Trichomonas |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: First examples of protozoan P DNA transposons. |
|||
|
Journal: Repbase Reports 9(10), 2161-2161 (2009) |
|||
Abstract: This is a young family of nonautonomous P DNA transposons identified in the Trichomonas vaginalis genome. The consensus was derived from multiple alignment of ~300 copies of P-1N1_TV, which are less than ~1% divergent from each other. P-1N1_TV is a nonautonomous DNA transposon transposed by the autonomous P-1_TV. The 923-bp P-1N1_TV is almost 100% identical to a deletion product of P-1_TV (after deletion of its internal region at pos 289-8380). TIRs are 20-bp long (4 mismatches). The genome contains over 300 copies of P-1N1_TV, which are 0.4% divergent from the consensus. Some copies are 100% identical to each other. Therefore, it is likely that P-1_TV and P-1N1_TV are still active transposons.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||