Repbase Reports

2009, Volume 9, Issue 1
January 31, 2009
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 55

CR1-Y_Pass

CR1 Non-LTR Retrotransposon from Passeriformes.

Submitted:
08-Jan-2009
Accepted:
31-Jan-2009
Key Words:
CR1; Non-LTR Retrotransposon; Transposable Element; CR1-Y_Pass; LINE
Source:
Passeriformes
Organism:
Passeriformes
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae
[1] Authors:
Smit,A.F.
Title:
CR1-Y_Pass - CR1 Non-LTR Retrotransposon from Passeriformes.
Journal:
Repbase Reports 9(1), 55-55 (2009)
Abstract:
subfamily10,35,36,37 19% partial gag (1-729), full pol ORF (725-3700). The pol is very close to that of chicken CR1-Y (82% at DNA level), the gag is closest to that of PSLINE in a turtle genome and CR1-E (bit no better than ca 65% at DNA level). The recombination in either the chicken or finch lineage ( or both) took place close before pos 889 (high similarity only after 889), so somewhat in the ORF2 region. The junction is confirmed by multiple copies not to be an artifact.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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