Repbase Reports

2009, Volume 9, Issue 1
January 31, 2009
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 52

CR1-X3_Pass

CR1 Non-LTR Retrotransposon from Passeriformes.

Submitted:
08-Jan-2009
Accepted:
31-Jan-2009
Key Words:
CR1; Non-LTR Retrotransposon; Transposable Element; CR1-X3_Pass; LINE
Source:
Passeriformes
Organism:
Passeriformes
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae
[1] Authors:
Smit,A.F.
Title:
CR1-X3_Pass - CR1 Non-LTR Retrotransposon from Passeriformes.
Journal:
Repbase Reports 9(1), 52-52 (2009)
Abstract:
21% Pos 1-1627 were not derived for this subfamily and are taken from CR1-X1. Complete pol ORF at pos 1421-4336 encodes a protein 70% identical (80% sim) to chicken CR1-X pol. There are many CR1 copies in chicken that match CR1-X3_Pass better than the current chicken CR1-X consensi, but many X3 copies are precisely absent and (so far) none are present at orthologous sites in chicken.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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