Repbase Reports

2009, Volume 9, Issue 1
January 31, 2009
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 50

CR1-X1_Pass

CR1 Non-LTR Retrotransposon from Passeriformes.

Submitted:
08-Jan-2009
Accepted:
31-Jan-2009
Key Words:
CR1; Non-LTR Retrotransposon; Transposable Element; CR1-X1_Pass; LINE
Source:
Passeriformes
Organism:
Passeriformes
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae
[1] Authors:
Smit,A.F.
Title:
CR1-X1_Pass - CR1 Non-LTR Retrotransposon from Passeriformes.
Journal:
Repbase Reports 9(1), 50-50 (2009)
Abstract:
subfamily1 17%. gag ORF (full) 311-1453, pol (1 frameshift) 1618-4348, but, like the distantly related R1-YB2_Tgu, there is a frameshift that appears tru in the consensus. The frameshift (2 bp missing) is at 3807, corresponding to pos 3239 of CR1-YB2_Pass. Notably, this is at a different, later spot then in CR1-YB2_Pass.With 600 copies of terminal 700 bp, coseg could find 2 or 3 subfamilies. These are at most 5-6% different from each other, and I get the impression that recombined copies have hopped around, so there is only one consensus. Absent at orthologous sites in chicken.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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