Repbase Reports |
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| 2009, Volume 9, Issue 1 |
| January 31, 2009 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 48 |
CR1-J2_Pass |
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CR1 Non-LTR Retrotransposon from Passeriformes. |
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Submitted: 08-Jan-2009 |
Accepted: 31-Jan-2009 |
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Key Words: CR1; Non-LTR Retrotransposon; Transposable Element; CR1-J2_Pass; LINE |
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Source: Passeriformes |
Organism: Passeriformes |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae |
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| [1] |
Authors: Smit,A.F. |
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Title: CR1-J2_Pass - CR1 Non-LTR Retrotransposon from Passeriformes. |
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Journal: Repbase Reports 9(1), 48-48 (2009) |
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Abstract: 23% ORFs: gag 64-1164, pol 1149-4184. The gag peptide is 68%/76% identica;/similar to CR1-X_gag; pol protein 76%/84% id/sim to CR1-H_pol and 83/87% to CR1-J1_Tgu_pol. The Ja/Je pol regions are 91-2% identical, but the gag regions of Je and Ja are 20% different, so that one has to be a recombination product. There may be some distinct subfamilies still to be worked out.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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