Repbase Reports

2009, Volume 9, Issue 1
January 31, 2009
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 48

CR1-J2_Pass

CR1 Non-LTR Retrotransposon from Passeriformes.

Submitted:
08-Jan-2009
Accepted:
31-Jan-2009
Key Words:
CR1; Non-LTR Retrotransposon; Transposable Element; CR1-J2_Pass; LINE
Source:
Passeriformes
Organism:
Passeriformes
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae
[1] Authors:
Smit,A.F.
Title:
CR1-J2_Pass - CR1 Non-LTR Retrotransposon from Passeriformes.
Journal:
Repbase Reports 9(1), 48-48 (2009)
Abstract:
23% ORFs: gag 64-1164, pol 1149-4184. The gag peptide is 68%/76% identica;/similar to CR1-X_gag; pol protein 76%/84% id/sim to CR1-H_pol and 83/87% to CR1-J1_Tgu_pol. The Ja/Je pol regions are 91-2% identical, but the gag regions of Je and Ja are 20% different, so that one has to be a recombination product. There may be some distinct subfamilies still to be worked out.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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