Repbase Reports

2008, Volume 8, Issue 7
July 31, 2008
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 778

hAT-11N_VV

hAT-11N_VV, a non-autonomous DNA transposon - a consensus sequence.

Submitted:
11-Jul-2008
Accepted:
31-Jul-2008
Key Words:
hAT; DNA transposon; Transposable Element; TIR; Hatvine-11; hAT-11N_VV
Source:
Vitis vinifera
Organism:
Vitis vinifera
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis
[1] Authors:
Benjak,A., Forneck,A. and Casacuberta,J.M.
Title:
Genome-wide analysis of the cut-and-paste transposons of grapevine. PlosONE: submitted.
Journal:
Repbase Reports 8(7), 778-778 (2008)
Abstract:
hAT-11N_VV (Hatvine-11 in [1]) consensus is a non-autonomous element. Its individual copies are >80% identical to the consensus sequence. Although the putative protein product contains a hAT family dimeristation conserved domain, it appears to be only partial compared to other hAT-related proteins found in Vitis. Additionally, individual copies do not contain an intact ORF due to premature stop codons and/or frameshifts. hAT-11N_VV contains 20 bp-long TIRs which are flanked by 8 bp-long TSDs.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2021 - Genetic Information Research Institute