Repbase Reports

2008, Volume 8, Issue 7
July 31, 2008
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 766

MuDR-6_VV

MuDR-6_VV, an autonomous DNA transposon - a consensus sequence.

Submitted:
11-Jul-2008
Accepted:
31-Jul-2008
Key Words:
MuDR; DNA transposon; Transposable Element; mutator; Mutavine-6; MuDR-6_VV
Source:
Vitis vinifera
Organism:
Vitis vinifera
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis
[1] Authors:
Benjak,A., Forneck,A. and Casacuberta,J.M.
Title:
Genome-wide analysis of the cut-and-paste transposons of grapevine. PlosONE: submitted.
Journal:
Repbase Reports 8(7), 766-766 (2008)
Abstract:
MuDR-6_VV (Mutavine-6 in [1]) consensus is an autonomous element. Its individual copies are >90% identical to the consensus sequence MuDR-6_VV does not contain TIRs, but is flanked 9 bp-long TSDs. Note that there are computational protein predictions for the transposases of few individual copies (proteins stored at NCBI), but the length of the proteins as well as splicing sites are not always consistent. Although some copies are theoretically able to produce a transposase protein with conserved domains characteristic for Mutators, it is still questionable whether true autonomous copies exist in the genome.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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