Repbase Reports

2008, Volume 8, Issue 7
July 31, 2008
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 764

MuDR-4_VV

MuDR-4_VV, an autonomous DNA transposon - a consensus sequence.

Submitted:
11-Jul-2008
Accepted:
31-Jul-2008
Key Words:
MuDR; DNA transposon; Transposable Element; mutator; TIR; Mutavine-4; MuDR-4_VV
Source:
Vitis vinifera
Organism:
Vitis vinifera
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis
[1] Authors:
Benjak,A., Forneck,A. and Casacuberta,J.M.
Title:
Genome-wide analysis of the cut-and-paste transposons of grapevine. PlosONE: submitted.
Journal:
Repbase Reports 8(7), 764-764 (2008)
Abstract:
MuDR-4_VV (Mutavine-4 in [1]) consensus is a virtual autonomous element. Its individual copies are >90% identical to the consensus sequence but do not contain an intact ORF due to stop codons and/or frameshifts. MuDR-4_VV contains 140-144 bp-long TIRs which are 96% identical to each other, flanked by 9 bp-long TSDs. MuDR-4_VV has an intronless transposase gene. Downstream of the transposase is a putative gene in a reverse orientation virtually encoding for a ULP1-like protein similar to CAN65286.1 (region 5952-4866).
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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