Repbase Reports

2008, Volume 8, Issue 4
April 30, 2008
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 516

Troyka-3-LTR_BF

LTR of the amphioxus Troyka-3_BF autonomous LTR retrotransposon - consensus.

Submitted:
29-Apr-2008
Accepted:
30-Apr-2008
Key Words:
Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous; Troyka group; Troyka-3-LTR_BF; Troyka-3_BF
Source:
Branchiostoma
Organism:
Branchiostoma
Taxonomy:
Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae
[2] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Troyka - a distinctive group of gypsy-like LTR retrotransposons inducing 3-bp target-site duplications.
Journal:
Repbase Reports 8(4), 516-516 (2008)
Abstract:
The internal portion of Troyka-3_BF is not reconstructed. Solo Troyka-3-LTR_BF elements are flanked by 3-bp target-site duplications and are less than 2% divergent from their consensus sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Putnam,N.H., Srivastava,M., Hellsten,U., Dirks,B., Chapman,J., Salamov,A., Terry,A., Shapiro,H., Lindquist,E., Kapitonov,V.V., Jurka,J., Genikhovich,G., Grigoriev,I.V., Lucas,S.M., Steele,R.E., Finnerty,J.R., Technau,U., Martindale,M.Q. and Rokhsar,D.S.
    Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
    Science 317(5834), 86-94 (2007)

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