Repbase Reports

2008, Volume 8, Issue 2
February 29, 2008
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 31

Chapaev-5_HM

Autonomous Chapaev DNA transposon -a consensus sequence.

Submitted:
27-Feb-2008
Accepted:
27-FEB-2008
Key Words:
Chapaev; DNA transposon; Transposable Element; Chapaev-5_HM
Source:
Hydra magnipapillata
Organism:
Hydra magnipapillata
Taxonomy:
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroida; Anthomedusae; Hydridae; Hydra
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Autonomous Chapaev transposons from the hydra genome.
Journal:
Repbase Reports 8(2), 31-31 (2008)
Abstract:
Chapaev-5_HM is a very young family of autonomous Chapaev DNA transposons that can be still active in the hydra genome (they are <0.4% divergent from their consensus sequence). The consensus sequence was obtained based on a multiple alignment of 25 copies; it codes for a 687-aa Chapaev transposase. Chapaev-5_HM is characterized by 4-bp target site duplications and 141-bp terminal inverted repeats. Based on the TPase identities, Chapaev-5_HM forms a distinctive group together with Chapaev-1_HM and Chapaev-2_HM. The N-terminal portion of this group TPase contains a Chapa-like zinc finger (H-X7-C-X2-C-X35-C-X2-C-x36/38-C-X2-C) but is free of the RING finger motif.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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