Repbase Reports

2008, Volume 8, Issue 2
February 29, 2008
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 35

Chapaev-3A_HM

Autonomous Chapaev DNA transposon -a consensus sequence.

Submitted:
27-Feb-2008
Accepted:
27-FEB-2008
Key Words:
Chapaev; DNA transposon; Transposable Element; Chapaev-3_HM; Chapaev-3A_HM
Source:
Hydra magnipapillata
Organism:
Hydra magnipapillata
Taxonomy:
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroida; Anthomedusae; Hydridae; Hydra
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Autonomous Chapaev transposons from the hydra genome.
Journal:
Repbase Reports 8(2), 35-35 (2008)
Abstract:
Chapaev-3A_HM is a very young subfamily of Chapaev-3_HM DNA transposons that was active in the hydra genome less than a few million years ago (copies are ~1% divergent from their consensus sequence). The consensus sequence was obtained based on a multiple alignment of 10 copies; it codes for a 938-aa Chapaev transposase (11 exons). Chapaev-3A_HM is characterized by 4-bp target site duplications, 10-bp terminal inverted repeats, and 22-bp subterminal inverted repeats (separated by 17- and 7-bp regions from the 5' and 3' TIRs, respectively).
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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