Repbase Reports

2008, Volume 8, Issue 12
December 31, 2008
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 2162

Gypsy-165-I_DR

An internal portion of the Gypsy-165_DR LTR retrotransposon - a consensus sequence.

Submitted:
17-Nov-2008
Accepted:
31-Dec-2008
Key Words:
Gypsy; LTR Retrotransposon; Transposable Element; endogenous retrovirus; Interspersed repeat; reverse transcriptase; gag; Gypsy superfamily; integrase; Gypsy-165-I_DR; Gypsy-165-LTR_DR; Gypsy-165_DR
Source:
Danio rerio
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
[1] Authors:
Dib,M.R. and Naveira,H.F.
Title:
Gypsy-165_DR, a family of LTR retrotransposons from zebrafish.
Journal:
Repbase Reports 8(12), 2162-2162 (2008)
Abstract:
Gypsy-165-I_DR is an internal portion of the Gypsy-165_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy-165-LTR_DR. Gypsy-165_DR is characterized by 4-bp target site duplications. The internal portion encodes two proteins: the 344-aa gag Gypsy30_DR1p (pos. 18-1049) and 1131-aa polyprotein (pos. 959-4351, conceptual translation) composed of the protease, reverse transcriptase, and integrase domains.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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