Repbase Reports

2008, Volume 8, Issue 12
December 31, 2008
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 2248

AluYd3a1_gib

AluYd3a1 subfamily - a consensus.

Submitted:
15-Mar-2001
Accepted:
31-Dec-2008
Key Words:
SINE1/7SL; SINE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous; Repetitive sequence; AluYd3a1; AluYd3a1_gib
Source:
Nomascus leucogenys leucogenys
Organism:
Nomascus leucogenys leucogenys
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus; Nomascus leucogenys
[1] Authors:
Jurka,J.
Title:
Very young Alu family from Gibbon.
Journal:
Repbase Reports 8(12), 2248-2248 (2008)
Abstract:
This Alu subfamily is present is several thousand copies in the gibbon genome 98-99% identical to consensus. It differs at 2 CpG positions T(133) and T/C(226) from the AluYd3a1 present in the human genome. Based on position 226, there are at least 2 subfamilies: one with T(226) and the second one wit C(226). There is no evidence that variations at T/C(226) are due to CpG decay.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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