Repbase Reports

2008, Volume 8, Issue 1
January 31, 2008
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 4

Transib-4_HM

Autonomous Transib DNA transposon -a consensus sequence.

Submitted:
30-Jan-2008
Accepted:
31-Jan-2008
Key Words:
Transib; DNA transposon; Transposable Element; Transib-4_HM
Source:
Hydra magnipapillata
Organism:
Hydra magnipapillata
Taxonomy:
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroida; Anthomedusae; Hydridae; Hydra
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Autonomous Transib transposons from the hydra genome.
Journal:
Repbase Reports 8(1), 4-4 (2008)
Abstract:
Transib-4_HM is a young family of autonomous Transib DNA transposons that were active in the hydra genome just a few million years ago (they are ~4% divergent from their consensus sequence). The consensus sequence was obtained based on a multiple alignment of ~20 copies; it codes for a 656-aa Transib transposase. Like other Transib transposons, Transib-4_HM is characterized by 5-bp target site duplications and short terminal inverted repeats.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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