Repbase Reports

2007, Volume 7, Issue 9
September 30, 2007
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 823

Gypsy46-I_DR

An internal portion of the Gypsy46_DR LTR retrotransposon - a consensus sequence.

Submitted:
25-Sep-2007
Accepted:
30-Sep-2007
Key Words:
LTR Retrotransposon; Transposable Element; Interspersed repeat; Gypsy; Gypsy superfamily; Gypsy46-I_DR; Gypsy46-LTR_DR; Gypsy46_DR; endogenous retrovirus; gag; integrase; reverse transcriptase
Source:
Danio rerio
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
[1] Authors:
Dib,M.R. and Naveira,H.F.
Title:
Gypsy46_DR, a family of LTR retrotransposons from zebrafish.
Journal:
Repbase Reports 7(9), 823-823 (2007)
Abstract:
Gypsy46-I_DR is an internal portion of the Gypsy46_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy46-LTR_DR. Gypsy46_DR is characterized by 4-bp target site duplications. The internal portion encodes one polyprotein the 1517-aa polyprotein Gypsy46_DR1p (pos. 701-5251) composed of the gag, protease, reverse transcriptase, and integrase domains. Some insertions fairly recent, according to the hight identity between their flanking LTRs. Consensus obtained after the alignment of at least five independent insertions bearing at least 85% homology over at least 1000bp.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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