Repbase Reports

2007, Volume 7, Issue 6
June 30, 2007
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 318

Gypsy2-PTR_I

LTR retrotransposon from Populus trichocarpa.

Submitted:
22-Jun-2007
Accepted:
30-Jun-2007
Key Words:
Gypsy; LTR Retrotransposon; Interspersed Repeat; Gypsy2-PTR_I
Source:
Populus balsamifera subsp. trichocarpa
Organism:
Populus balsamifera subsp. trichocarpa
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids; eurosids I; Malpighiales; Salicaceae; Saliceae; Populus; Populus balsamifera
[2] Authors:
Kohany,O. and Jurka,J.
Title:
LTR retrotransposons from Populus trichocarpa.
Journal:
Repbase Reports 7(6), 318-318 (2007)
Abstract:
Positions [1955-2458] - Reverse transcriptase Positions [3524-4003] - Integrase core 'CCTAC' target site duplication LTRs are 99% similar to each other.
Derived:
Positions 2372329 2376935 Accession No scaffold_41 Genome
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Xu,Z. and Wang,H.
    LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons.
    Nucleic Acids Res0-0 (2007)

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