Repbase Reports

2007, Volume 7, Issue 2
February 28, 2007
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 116

Kolobok-1_BF

A family of autonomous Kolobok transposons - a consensus.

Submitted:
27-Feb-2007
Accepted:
28-Feb-2007
Key Words:
Kolobok; DNA transposon; Interspersed Repeat; Kolobok-1_BF
Source:
Branchiostoma floridae
Organism:
Branchiostoma floridae
Taxonomy:
Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Kolobok, a novel superfamily of eukaryotic DNA transposons.
Journal:
Repbase Reports 7(2), 116-116 (2007)
Abstract:
Kolobok-1_BF is a consensus sequence of a family of autonomous Kolobok transposons that were active in the lancelet genome in a last few million years. The Kolobok-1_BF transposon is characterized by 212-bp terminal inverted repeats, TTAA target site duplications, and it encodes two proteins: (i) the 835-aa transposase, Kolobok-1_BF1p, composed of the THAP DNA-binding domain and catalytic "DDE" domain, which is conserved in all Kolobok transposases, and (ii) the 281-aa Kolobok-1_BF2p protein. The second protein is conserved in highly diverse Kolobok transposons present in the genomes of vertebrates (frog, fish), chordates (lancelet, sea urchin, sea squirt), and cnidarians (starlet sea anemone). See also comments in Kolobok-1_XT.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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