Repbase Reports

2007, Volume 7, Issue 12
December 31, 2007
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1201

hAT6-1_SP

Sea urchin hAT6-1_SP autonomous DNA transposon - a consensus sequence.

Submitted:
31-Dec-2007
Accepted:
31-Dec-2007
Key Words:
hAT; DNA transposon; Transposable Element; 6-bp TSDs; hAT6 group; hAT6-1N1_SP; hAT6-1_SP
Source:
Strongylocentrotus purpuratus
Organism:
Strongylocentrotus purpuratus
Taxonomy:
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
hAT6 - a novel group of hAT DNA transposons characterized by 6-bp target site duplications.
Journal:
Repbase Reports 7(12), 1201-1201 (2007)
Abstract:
hAT6-1_SP is a young family of hAT DNA transposons and it belongs to a novel group of hAT transposons, called hAT6, generating 6-bp target site duplications upon their insertions into chromosomal DNA. The hAT6 transposase is remotely similar to the standard hAT transposase; identified hAT6 transposase sequences form a distinctive phylogenetic cluster. hAT6-1_SP is flanked by 13-bp TIRs and encodes a 713-aa transposase (2 exons). The transposase contains the C2H2 zinc finger motif present in diverse hAT transposase sequences encoded by different hAT transposons. hAT6-1N1_SP is a non-autonomous deletion derivate of hAT6-1_SP.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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