Repbase Reports

2007, Volume 7, Issue 1
January 31, 2007
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 86

SHAGY_I_MT

Internal region of gypsy -like LTR retroposon, SHAGY_MT, from Medicago truncatula.

Submitted:
12-Jan-2007
Accepted:
31-Jan-2007
Key Words:
Gypsy; LTR Retrotransposon; Interspersed Repeat; LTR; retroposon; internal region; Interspersed; repeat; ORF; SHAGY_I_MT
Source:
Medicago truncatula
Organism:
Medicago truncatula
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
[1] Authors:
Shankar,R. and Jurka,J.
Title:
SHAGY_MT: LTR retroposon from barrel medic.
Journal:
Repbase Reports 7(1), 86-86 (2007)
Abstract:
The internal region has two different reading frames. The first frame has intact domain for retroelement gag protein while the second reading frame has intact domains of RT polymerase followed by integrase, a hallmark of Gypsy-like LTR retroposons. The complete sequence is present in few copies.
Derived:
Positions 73183 78431 Accession No AC136141 EMBL/GenBank/DDBJ
Download Sequence - Format:
IG, EMBL, FASTA
References:

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