Repbase Reports

2007, Volume 7, Issue 1
January 31, 2007
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 73

SHACOP3_I_MT

Internal region of LTR retroposon, SHACOP3_MT, from Medicago truncatula.

Submitted:
12-Jan-2007
Accepted:
31-Jan-2007
Key Words:
Copia; LTR Retrotransposon; Interspersed Repeat; LTR; retroposon; internal region; Interspersed; repeat; ORF; polyprotein; SHACOP3_I_MT
Source:
Medicago truncatula
Organism:
Medicago truncatula
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
[1] Authors:
Shankar,R. and Jurka,J.
Title:
SHACOP3_MT: LTR retroposon from barrel medic.
Journal:
Repbase Reports 7(1), 73-73 (2007)
Abstract:
The internal region is complete and intact. It is present in 5-6 complete copies in the Medicago genome. It has a single frame in which intact domains of gag,integrase,pol and CCHC zinc finger motif are present. On both sides it is flanked by intact LTRs which are highly identical to COP4_MT LTRs (>90%).
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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