Repbase Reports

2007, Volume 7, Issue 1
January 31, 2007
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 47

RAVLIN2_MT

A LINE element from Medicago truncatula.

Submitted:
16-Jan-2007
Accepted:
31-Jan-2007
Key Words:
L1; Non-LTR Retrotransposon; Interspersed Repeat; retroposon; LINE; Poly-A tail; ORF; RAVLIN2_MT
Source:
Medicago truncatula
Organism:
Medicago truncatula
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
[1] Authors:
Shankar,R. and Jurka,J.
Title:
RAVLIN2_MT: A LINE element from barrel medic.
Journal:
Repbase Reports 7(1), 47-47 (2007)
Abstract:
This LINE element shares closest proximity with RAVLIN LINE (~85%). It's present in Medicago genome in multiple copies whose central domain is well conserved and moderately conserved tail region, while in most of the cases 5' end is heavily truncated. This sequence has characteristic features of L1 as well as it exhibits a RNAseH domain after RT polymerase domain, a feature of I-elements of drosophila, though this sequence has poly-A tail end. Also it has CCHC zinc finger protein domain in 1st ORF.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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