Repbase Reports

2006, Volume 6, Issue 5
May 31, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 259

NonLTR-5_CR

It is a putative nonautonomous non-LTR retrotransposon - a consensus sequence.

Submitted:
31-May-2006
Accepted:
31-May-2006
Key Words:
Non-LTR Retrotransposon; Interspersed Repeat; Non-autonomous; L1-3_CR; NonLTR-5_CR
Source:
Chlamydomonas reinhardtii
Organism:
Chlamydomonas reinhardtii
Taxonomy:
Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
NonLTR-5_CR, a putative long nonautonomous non-LTR retrotransposons in the green algae genome.
Journal:
Repbase Reports 6(5), 259-259 (2006)
Abstract:
This transposable element is a putative non-LTR retrotransposon, characterized by ~15-bp target site duplications and frequent truncation of 5' terminal portions. Despite its length this element does not encode recognizable reverse transcriptase/endonuclease. Most likely it is a nonautonomous non-LTR retrotransposon. Although NonLTR-5_CR contains long two long ORFs in different frames, they seem to be meaningless. NonLTR-5_CR (pos. 3468-5270) is 69% identical to L1-3_CR (pos. 456-1990).
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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