Repbase Reports

2006, Volume 6, Issue 5
May 31, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 258

MarinerL-1_CR

MarinerL-1_CR is a family of nonautonomous Mariner DNA transposons - a consensus sequence.

Submitted:
08-Jun-2004
Accepted:
31-May-2006
Key Words:
Mariner; DNA transposon; Interspersed Repeat; Non-autonomous; MarinerL-1_CR
Source:
Chlamydomonas reinhardtii
Organism:
Chlamydomonas reinhardtii
Taxonomy:
Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
[2] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
MarinerL-1_CR, a family of nonautonomous Mariner transposons in the Chlamydomonas reinhardtii genome.
Journal:
Repbase Reports 6(5), 258-258 (2006)
Abstract:
MarinerL-1_CR likely belongs to a family of Mariner nonautonomous transposons. The consensus sequences is still incomplete because of assembly problems. This transposon is active, it characterized by 2-bp target site duplications. Like other transosable elments in the chlamy genome, MarinerL-1_CR is GC-rich; as a result, it contains long ORFs that most likely do not code for any real proteins. This element is probably still transposable (over 99% identity between different copies). The 49-bp 5' and 100-bp 3' termini of MarinerL-1_CR are 84% and 96% identical to the left end of Tcr3 [1].
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Wang,S.C., Schnell,R.A. and Lefebvre,P.A.
    Isolation and characterization of a new transposable element in Chlamydomonas reinhardtii.
    Plant Mol Biol 38(5), 681-687 (1998)

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