Repbase Reports

2006, Volume 6, Issue 5
May 31, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 241

Gypsy-9-I_CR

Gypsy-9-I_CR is an internal portion of Gypsy-9_CR LTR retrotransposon - a fossilized copy.

Submitted:
31-May-2006
Accepted:
31-May-2006
Key Words:
Gypsy; LTR Retrotransposon; Interspersed Repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-9-I_CR; Gypsy-9-LTR_CR
Source:
Chlamydomonas reinhardtii
Organism:
Chlamydomonas reinhardtii
Taxonomy:
Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Gypsy-9_CR, a family of gypsy LTR retrotransposons from the green algae genome.
Journal:
Repbase Reports 6(5), 241-241 (2006)
Abstract:
This is an internal portion of Gypsy-9_CR LTR retrotransposon. It encodes one 2689-aa polyprotein composed of gag, reverse transcriptase, PHD zinc finger, and integrase. This polyprotein is characterized by unusually long distance between the reverse transcriptase and integrase (~800 aa). The internal portion contains also a second ORF2 (pos. 9768-11813), which may be artificial because of the high GC content.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2019 - Genetic Information Research Institute