Repbase Reports

2006, Volume 6, Issue 3
March 31, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 162

P-1_CR

P-1_CR is a family of P autonomous DNA transposons - a consensus sequence.

Submitted:
29-Mar-2006
Accepted:
31-Mar-2006
Key Words:
P; DNA transposon; Interspersed Repeat; P-1_CR
Source:
Chlamydomonas reinhardtii
Organism:
Chlamydomonas reinhardtii
Taxonomy:
Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
P-1_CR, a family of P autonomous DNA transposons in the Chlamydomonas reinhardtii genome.
Journal:
Repbase Reports 6(3), 162-162 (2006)
Abstract:
This is a first example of P transposons in viridiplantae. P-1_CR encodes a 1822-aa TPase composed of the DDE domain conserved in all P transposases (aa pos. 537-1121) and PHD zinc finger (pos. 1670-1715). The P-1CR TPase is predicted to be encoded by 15 exons (based on FGENESH and comparison with other P transposases ). P-1_CR is characterized by 8-bp target site duplications and 146-bp TIRs. The genome is populated by several families of nonautonomous transposons derived from P-1_CR (DNA-8-1_CR, DNA-8-2_CR, DNA-8-3_CR).
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2019 - Genetic Information Research Institute