Repbase Reports

2006, Volume 6, Issue 2
February 28, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 100

Mariner-4B_AF

A subfamily of nonautonomous Mariner DNA transposons - a consensus sequence.

Submitted:
28-Feb-2006
Accepted:
28-Feb-2006
Key Words:
Mariner; DNA transposon; Interspersed Repeat; Non-autonomous; Mariner-4_AF; Mariner-4B_AF
Source:
Aspergillus fumigatus
Organism:
Aspergillus fumigatus
Taxonomy:
Eukaryota; Fungi; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus
[2] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Mariner-4_AF, a family of Mariner DNA transposons in the Aspergillus fumigatus genome.
Journal:
Repbase Reports 6(2), 100-100 (2006)
Abstract:
It is a nonautonomous subfamily of Mariner-4_AF from the Mariner superfamily (Tc1 clade). The Mariner-4B_AF and Mariner-4_AF consensus sequences are 84% identical to each other. The 16% divergence is due to 327 mismatches (all are transitions) induced by RIP. The transposase coding region of Mariner-4_AF was completely destroyed by RIP in Mariner-4B_AF.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Galagan,J.E., Calvo,S.E., Cuomo,C., Ma,L.J., Wortman,J.R., Batzoglou,S., Lee,S.I., Spevak,C.C., Basturkmen,M., Clutterbuck,J., Kapitonov,V., Jurka,J., Scazzocchio,C., Farman,M., Butler,J., Purcell,S., Harris,S., Braus,G.H., Draht,O., Busch,S., D'Enfert,C., Bouchier,C., Goldman,G.H., Bell-Pedersen,D., Griffiths-Jones,S., Doonan,J.H., Yu,J., Vienken,K., Pain,A., Freitag,M., Selker,E.U., Archer,D.B., Penalva,M.A., Oakley,B.R., Momany,M., Tanaka,T., Kumagai,T., Asai,K., Machida,M., Nierman,W.C., Denning,D.W., Caddick,M., Hynes,M., Paoletti,M., Fischer,R., Miller,B., Dyer,P., Sachs,M.S., Osmani,S.A. and Birren,B.W.
    Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.
    Nature 438(7071), 1105-1115 (2005)

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