Repbase Reports

2006, Volume 6, Issue 2
February 28, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 107

MARINERNA9_MD

MARINERNA9_MD; a probable non-autonomous Mariner element from opossum Monodelphis domestica.

Submitted:
22-Feb-2006
Accepted:
28-Feb-2006
Key Words:
Mariner; DNA transposon; Interspersed Repeat; non-autonomous; MARINERNA9_MD
Source:
Monodelphis domestica
Organism:
Monodelphis domestica
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
[2] Authors:
Gentles,A. and Jurka,J.
Title:
MARINERNA9_MD, a family of nonautonomous Mariner elements from M. domestica.
Journal:
Repbase Reports 6(2), 107-107 (2006)
Abstract:
This sequence is probably a non-autonomous Mariner, based on 21 bp terminal inverted repeats, and TA TSDs. Average similarity to the consensus is ~84%. Shares similarity to part of MARINERNA4_MD - possibly derived from same autonomous element. Around 2000 copies in the Monodelphis genome. The consensus was reconstructed from the June 2005 release of the 6.8X WGS sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. The Broad Institute of MIT and Harvard, Cambridge, MA, USA. Monodelphis domestica sequencing consortium
    Monodelphis domestica WGS sequence.
    Initial data release, version 2

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