Repbase Reports

2006, Volume 6, Issue 2
February 28, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 75

LTR37_MD

LTR37_MD, a family of retroviral long terminal repeats from Monodelphis domestica - consensus.

Submitted:
08-Feb-2006
Accepted:
28-Feb-2006
Key Words:
Endogenous Retrovirus; Interspersed Repeat; MdoLTR1-int
Source:
Monodelphis domestica
Organism:
Monodelphis domestica
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
[3] Authors:
Gentles,A. and Jurka,J.
Title:
LTR37_MD, a family of long terminal repeats from the opossum M. domestica.
Journal:
Repbase Reports 6(2), 75-75 (2006)
Abstract:
LTR37_MD is a non-autonomous LTR element, probably of an ERV. Average similarity of copies to the consensus is around 96%. It is 84% similar along 2/3 of its length to LTR16_MD, but high similarity within these groups suggests separate families. The autonomous element corresponding to this LTR is unknown. This consensus was reconstructed from the June 2005 release of the 6.8X WGS sequence.
Derived:
[3] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. The Broad Institute of MIT and Harvard, Cambridge, MA, USA. Monodelphis domestica sequencing consortium
    Monodelphis domestica WGS sequence.
    Initial data release, version 2
  2. Smit,A.F.A.
    Mdo2LTR1-int.
    Direct Submission to Repbase Update (27-OCT-2005)

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