Repbase Reports

2006, Volume 6, Issue 2
February 28, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 56

ERV5a_MD_I

ERV5a_MD, a class 2 endogenous retrovirus from Monodelphis domestica - consensus of internal sequence.

Submitted:
15-Feb-2006
Accepted:
28-Feb-2006
Key Words:
ERV2; Endogenous Retrovirus; Interspersed Repeat; integrase; reverse transcriptase; ERV5_MD_I
Source:
Monodelphis domestica
Organism:
Monodelphis domestica
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
[2] Authors:
Gentles,A. and Jurka,J.
Title:
ERV5a_MD, a class 2 ERV that may have derived from an RNA recombination event in the opossum M. domestica.
Journal:
Repbase Reports 6(2), 56-56 (2006)
Abstract:
Copies of this consensus are around 95% similar to it, indicating that this is another element that may have been active relatively recently. The internal sequence is highly similar across several kb to ERV5_MD_I, indicating a possible RNA recombination event. However the LTRs are completely different, and this sequence has a 6 bp TSD. The corresponding LTR is deposited as ERV5a_MD_LTR. This consensus was reconstructed from the June 2005 release of the 6.8X WGS sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. The Broad Institute of MIT and Harvard, Cambridge, MA, USA. Monodelphis domestica sequencing consortium
    Monodelphis domestica WGS sequence.
    Initial data release, version 2

© 2001-2020 - Genetic Information Research Institute