Repbase Reports

2006, Volume 6, Issue 10
October 31, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 495

Helitron-N1_DR

A family of non-autonomous Helitrons - a consensus sequence.

Submitted:
31-Oct-2006
Accepted:
31-OCT-2006
Key Words:
Helitron; DNA transposon; Interspersed Repeat; Nonautonomous; Helitron-N2_XT; Helitron-N1_DR
Source:
Danio rerio
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
[1] Authors:
Kapitonov,V.V.
Title:
Helitron-N1_DR, a family of non-autonomous Helitrons from zebrafish.
Journal:
Repbase Reports 6(10), 495-495 (2006)
Abstract:
This transposon is usually inserted into A|TT target sites (no TSDs). Subterminal TIRs: pos. 3-15 and 2550-2538; a palindrome at pos. 2552-2571. The Helitron-N1_DR consensus sequence is 76% identical to the consensus sequence of the Helitron-N2_XT from the frog genome. Therefore, horizontal transfer was involved in evolution of these transposons.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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