Repbase Reports

2006, Volume 6, Issue 1
January 31, 2006
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 46

SINE3-2_AO

SINE3 nonautonomous non-LTR retrotransposon - a consensus sequence.

Submitted:
24-Jan-2006
Accepted:
31-Jan-2006
Key Words:
SINE3; SINE; Non-LTR Retrotransposon; Interspersed Repeat
Source:
Aspergillus oryzae
Organism:
Aspergillus oryzae
Taxonomy:
Eukaryota; Fungi; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus
[2] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
SINE3-2_AO, a family of 5S rRNA-derived nonautonomous non-LTR retrotransposons in the Aspergillus oryzae genome.
Journal:
Repbase Reports 6(1), 46-46 (2006)
Abstract:
SINE3-2_AO is a family of SINE3-like retrotranposons in the A. oryzae genome (a conceptual consensus sequence, 2 copies). The 65-bp 5' terminal portion (pos. 6-70) is derived from 5S rRNA (pos. 3-67, 98% identity to the A. oryzae 5S r RNA) and includes the polIII internal promoter. SINE3-2_AO encodes a hypothetical protein (pos 400-2500). There are several diverged families of SINE3-2_AO-like elements in the A. nidulans, A. fumigatus, and A. oryzae genomes.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Galagan,J.E., Calvo,S.E., Cuomo,C., Ma,L.J., Wortman,J.R., Batzoglou,S., Lee,S.I., Spevak,C.C., Basturkmen,M., Clutterbuck,J., Kapitonov,V., Jurka,J., Scazzocchio,C., Farman,M., Butler,J., Purcell,S., Harris,S., Braus,G.H., Draht,O., Busch,S., D'Enfert,C., Bouchier,C., Goldman,G.H., Bell-Pedersen,D., Griffiths-Jones,S., Doonan,J.H., Yu,J., Vienken,K., Pain,A., Freitag,M., Selker,E.U., Archer,D.B., Penalva,M.A., Oakley,B.R., Momany,M., Tanaka,T., Kumagai,T., Asai,K., Machida,M., Nierman,W.C., Denning,D.W., Caddick,M., Hynes,M., Paoletti,M., Fischer,R., Miller,B., Dyer,P., Sachs,M.S., Osmani,S.A. and Birren,B.W.
    Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.
    Nature 438(7071), 1105-1115 (2005)

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