Repbase Reports

2005, Volume 5, Issue 9
September 30, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 235

ATLANTYS_LC_I

ATLANTYS-like LTR retrotransposon from Lotus corniculatus, internal consensus.

Submitted:
30-Sep-2005
Accepted:
30-Sep-2005
Key Words:
Gypsy; LTR Retrotransposon; Interspersed Repeat; Atlantys; gag-pol; reverse transcriptase; RNase H
Source:
Lotus corniculatus var. japonicus
Organism:
Lotus corniculatus var. japonicus
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus; Lotus corniculatus
[1] Authors:
Gentles,A. and Jurka,J.
Title:
An ATLANTYS-like LTR retrotransposon of the legume Lotus japonicus.
Journal:
Repbase Reports 5(9), 235-235 (2005)
Abstract:
This retroelement is similar to various Gypsy, but shares the characteristic, with other ATLANTYS sequences, of putative coding ORFs of unknown function on the complementary strand. The coding strand contains two overlapping ORFs for gag-pol/RNaseH, and reverse transcriptase. The ORFs on the complementary strand are separated by ~600 bp, and occur in the position opposite the normal env gene. They putatively encode sequences of 447 aa and 763 aa. The 763 aa ORF is similar to predicted aminotransferase-like proteins in rice (Oryza sativa). The shorter ORF shows no similarity to known proteins. There are 6 full-length copies in currently available sequence, which are >96% similar to the consensus.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2019 - Genetic Information Research Institute