Repbase Reports

2005, Volume 5, Issue 7
July 31, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 180

HAT17_CB

HAT17_CB - a family of nonautonomous hAT-like transposons.

Submitted:
31-Jul-2005
Accepted:
31-Jul-2005
Key Words:
hAT; DNA transposon; Interspersed Repeat; Non-autonomous; Cb000365
Source:
Caenorhabditis briggsae
Organism:
Caenorhabditis briggsae
Taxonomy:
Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[2] Authors:
Pavlicek,A. and Jurka,J.
Title:
HAT17_CB - a family of nonautonomous hAT-like transposons.
Journal:
Repbase Reports 5(7), 180-180 (2005)
Abstract:
The consensus sequence was reconstructed from the Ensembl genome annotation. Copies are ~90% identical to the consensus. HAT17_CB has a palindromic structure and is flanked by 8bp target duplications. A central segment is distantly related to HAT14_CB.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,L.D., Bao,Z., Blasiar,D., Blumenthal,T., Brent,M.R., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A., Coulson,A., D'Eustachio,P., Fitch,D.H., Fulton,L.A., Fulton,R.E., Griffiths-Jones,S., Harris,T.W., Hillier,L.W., Kamath,R., Kuwabara,P.E., Mardis,E.R., Marra,M.A., Miner,T.L., Minx,P., Mullikin,J.C., Plumb,R.W., Rogers,J., Schein,J.E., Sohrmann,M., Spieth,J., Stajich,J.E., Wei,C., Willey,D., Wilson,R.K., Durbin,R. and Waterston,R.H.
    The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.
    PLoS Biol 1(2), 166-192 (2003)

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