Repbase Reports

2005, Volume 5, Issue 6
June 30, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 164

SINE2-6_SP

A family of SINE retrotransposons - a consensus sequence.

Submitted:
30-Jun-2005
Accepted:
30-Jun-2005
Key Words:
SINE2; SINE; Interspersed Repeat; Non-autonomous; non-LTR retrotransposon; SINE2-4a_SP; SINE2-4b_SP; SINE2-6_SP
Source:
Strongylocentrotus purpuratus
Organism:
Strongylocentrotus purpuratus
Taxonomy:
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
SINE2-6_SP, a family of SINE2 retrotransposons in the sea urchin genome.
Journal:
Repbase Reports 5(6), 164-164 (2005)
Abstract:
The genome harbors several hundred copies of SINE2-6_SP elements that are ~95% identical to the SINE2-6_SP consensus sequence (>1000 elements ale ~85% identical to the consensus). The SINE2-6_SP 150-bp 5'-terminal portion is ~91% identical to to the 5' terminal parts of SINE2-4a_SP, SINE2-4b_SP, and SINE2-4c_SP elements. The remaining 224-bp portion of SINE2-6_SP is not related to SINE2-4_SP-like elements (excluding the 3' terminus composed of the ATT minisatellite. Putative classification: a CR1-dependent SINE2.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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