Repbase Reports

2005, Volume 5, Issue 6
June 30, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 163

SINE2-5_SP

A family of SINE retrotransposons - a consensus sequence.

Submitted:
30-Jun-2005
Accepted:
30-Jun-2005
Key Words:
SINE2; SINE; Interspersed Repeat; Non-autonomous; non-LTR retrotransposon; SINE2-2_SP; SINE2-4_SP; SINE2-5_SP
Source:
Strongylocentrotus purpuratus
Organism:
Strongylocentrotus purpuratus
Taxonomy:
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
SINE2-5_SP, a family of SINE2 retrotransposons in the sea urchin genome.
Journal:
Repbase Reports 5(6), 163-163 (2005)
Abstract:
The genome harbors ~1000 copies of SINE2-5_SP elements that are ~85% identical to the SINE2-5_SP consensus sequence. The SINE2-5_SP looks as a product of recombination between SINE2-4_SP and SINE2-2_SP. Its 146-bp 5'-terminal portion is ~80% identical to the 5' terminal parts of SINE2-4 elements. The remaining portion of SINE2-5_SP is 83% identical to the 3' terminal portion of SINE2-2_SP.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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