Repbase Reports

2005, Volume 5, Issue 6
June 30, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 161

SINE2-4c_SP

A subfamily of SINE2 retrotransposons - a consensus sequence.

Submitted:
30-Jun-2005
Accepted:
30-Jun-2005
Key Words:
SINE2; SINE; Interspersed Repeat; Non-autonomous; CR1; non-LTR retrotransposon; SINE2-4_SP; SURF1; SINE2-4c_SP
Source:
Strongylocentrotus purpuratus
Organism:
Strongylocentrotus purpuratus
Taxonomy:
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus
[2] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
SINE2-4_SP, a family of SINE2 retrotransposons in the sea urchin genome.
Journal:
Repbase Reports 5(6), 161-161 (2005)
Abstract:
SINE2-4c_SP is a subfamily of SINE2-4_SP (the consensus sequences are 79% identical to each other). The genome harbors several hundred copies of SINE2-4c_SP elements that are ~88% identical to the SINE2-4c_SP consensus sequence. This subfamily was originally reported in [1] as SURF1.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Nisson,P.E., Hickey,R.J., Boshar,M.F. and Crain,W.R.
    Identification of a repeated sequence in the genome of the sea urchin which is transcribed by RNA polymerase III and contains the features of a retroposon.
    Nucleic Acids Res 16(4), 1431-1452 (1988)

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