Repbase Reports

2005, Volume 5, Issue 6
June 30, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 145

HERV1_I

Human endogenous retrovirus HERV1 - a consensus.

Submitted:
30-Jun-2005
Accepted:
30-Jun-2005
Key Words:
Endogenous Retrovirus; Interspersed Repeat; LTR; Internal sequence of human endogenous retrovirus; HERV1
Source:
Homo sapiens
Organism:
Homo sapiens
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo
[1] Authors:
Polavarapu,N., Bowen,N.J. and Mcdonald,J.F.
Title:
Consensus sequence of human endogenous retrovirus HERV1.
Journal:
Repbase Reports 5(6), 145-145 (2005)
Abstract:
LTRs of the element are deposited as HERV1_LTR in repbase.Target site duplications are 4bp.There is ~6% divergence between HERV1 elements and their consensus sequence.The HERV1 consensus sequence encodes gag, protease, reverse transcriptase, RNase H, integrase and envelope proteins. Pol proteins are 50-55% identical to Human endogenous retrovirus HCML-ARV. HERV1 intraelement LTR identity is 93% to 96%. Gag region: nt 914..2521, Polymerase region: 2687..6341, Envelope region : 6657..8552.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2019 - Genetic Information Research Institute