Repbase Reports

2005, Volume 5, Issue 5
May 31, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 130

RIREX_I

Internal portion of gypsy-type LTR retrotransposon - a consensus.

Submitted:
31-May-2005
Accepted:
31-May-2005
Key Words:
Gypsy; LTR Retrotransposon; Interspersed Repeat; HGWP repeat
Source:
Oryza sativa
Organism:
Oryza sativa
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; Ehrhartoideae; Oryzeae; Oryza
[1] Authors:
Jurka,J.
Title:
Gypsy-class endogenous retrovirus RIREX.
Journal:
Repbase Reports 5(5), 130-130 (2005)
Abstract:
RIREX is distantly similar to RIRE2. The internal sequence is highly repetitive and contains three overlapping ORFs with multiple HGWP motifs. There is no clear evidence of retroviral proteins and the element may be non-autonomous. Individual copies are ~10% diverged from the consensus.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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